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OpenSAFELY: factors associated with COVID-19 death in 17 million patients

    Article – Published: 08 July 2020 This is an unedited manuscript that has been accepted for publication. Nature Research are providing this early version of the manuscript as a service to our authors and readers. The manuscript will undergo copyediting, typesetting and a proof review before it is published in its final form. Please note that … Continued

Article – Published: 08 July 2020

This is an unedited manuscript that has been accepted for publication. Nature Research are providing this early version of the manuscript as a service to our authors and readers. The manuscript will undergo copyediting, typesetting and a proof review before it is published in its final form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers apply.

OpenSAFELY: factors associated with COVID-19 death in 17 million patients

Elizabeth J. WilliamsonAlex J. WalkerKrishnan BhaskaranSeb BaconChris BatesCaroline E. MortonHelen J. CurtisAmir MehrkarDavid EvansPeter InglesbyJonathan CockburnHelen I. McDonaldBrian MacKennaLaurie TomlinsonIan J. DouglasChristopher T. RentschRohini MathurAngel Y. S. WongRichard GrieveDavid HarrisonHarriet ForbesAnna SchultzeRichard CrokerJohn ParryFrank HesterSam HarperRafael PereraStephen J. W. EvansLiam Smeeth & Ben Goldacre

Abstract

COVID-19 has rapidly affected mortality worldwide1. There is unprecedented urgency to understand who is most at risk of severe outcomes, requiring new approaches for timely analysis of large datasets. Working on behalf of NHS England, here we created OpenSAFELY: a secure health analytics platform covering 40% of all patients in England, holding patient data within the existing data centre of a major primary care electronic health records vendor. Primary care records of 17,278,392 adults were pseudonymously linked to 10,926 COVID-19-related deaths. COVID-19-related death was associated with: being male (hazard ratio (HR) 1.59, 95% confidence interval (CI) 1.53–1.65); older age and deprivation (both with a strong gradient); diabetes; severe asthma; and various other medical conditions. Compared with people with white ethnicity, Black and South Asian people were at higher risk even after adjustment for other factors (HR 1.48, 1.30–1.69 and 1.44, 1.32–1.58, respectively). We have quantified a range of clinical risk factors for COVID-19-related death in the largest cohort study conducted by any country to date. OpenSAFELY is rapidly adding further patients’ records; we will update and extend results regularly.